WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08B1.1b.1 Sequence Name  T08B1.1b.1
Length (nt)  2069   Chromosome Location  V: 1982631-1986859
Chromosome . Primary Identifier  V Chromosome Location . Start  1982631
Chromosome Location . End  1986859 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08B1.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020340 T08B1.1 T08B1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08B1.1b T08B1.1b 1839   V: 1982788-1982944

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08B1.1b.1 1982631 1986859 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon173404   314   V: 1982631-1982944 Caenorhabditis elegans
Exon173407   216   V: 1983073-1983288 Caenorhabditis elegans
Exon173410   328   V: 1983335-1983662 Caenorhabditis elegans
Exon173413   101   V: 1983714-1983814 Caenorhabditis elegans
Exon173416   539   V: 1984304-1984842 Caenorhabditis elegans
Exon173420   102   V: 1985468-1985569 Caenorhabditis elegans
Exon173422   68   V: 1985615-1985682 Caenorhabditis elegans
Exon173424   81   V: 1985729-1985809 Caenorhabditis elegans
Exon173426   320   V: 1986540-1986859 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08B1.1b.1 1982631 1986859 -1

1 Sequence

Length
2069

1 Sequence Ontology Term

Identifier Name Description
transcript