WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y5H2B.2b.1 Sequence Name  Y5H2B.2b.1
Length (nt)  1418   Chromosome Location  V: 2192485-2196827
Chromosome . Primary Identifier  V Chromosome Location . Start  2192485
Chromosome Location . End  2196827 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y5H2B.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003612 nhr-13 Y5H2B.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y5H2B.2b Y5H2B.2b 1278   V: 2192501-2192584

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y5H2B.2b.1 2192485 2196827 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon173922   100   V: 2192485-2192584 Caenorhabditis elegans
Exon173925   154   V: 2192716-2192869 Caenorhabditis elegans
Exon173927   155   V: 2193090-2193244 Caenorhabditis elegans
Exon173929   162   V: 2193295-2193456 Caenorhabditis elegans
Exon173931   132   V: 2193500-2193631 Caenorhabditis elegans
Exon173933   65   V: 2193683-2193747 Caenorhabditis elegans
Exon173935   245   V: 2193794-2194038 Caenorhabditis elegans
Exon173937   149   V: 2196171-2196319 Caenorhabditis elegans
Exon173938   95   V: 2196420-2196514 Caenorhabditis elegans
Exon173940   161   V: 2196667-2196827 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y5H2B.2b.1 2192485 2196827 1

1 Sequence

Length
1418

1 Sequence Ontology Term

Identifier Name Description
transcript