WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00202502 Gene Name  F41B5.12
Sequence Name  ? F41B5.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by Ketamine based on RNA-seq studies. Is predicted to encode a protein with the following domains: TRA-1 regulated protein R03H10.4 and TRA-1 regulated. Biotype  SO:0001217
Genetic Position  :± Length (nt)  ? 888
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00202502

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F41B5.12a.1 F41B5.12a.1 611   V: 2260960-2261847
Transcript:F41B5.12b.1 F41B5.12b.1 435   V: 2261223-2261847
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F41B5.12a F41B5.12a 552   V: 2261019-2261132
CDS:F41B5.12b F41B5.12b 435   V: 2261223-2261256

0 RNAi Result

55 Allele

Public Name
gk963301
WBVar01585079
WBVar01585080
WBVar01585081
WBVar01585082
WBVar01585083
WBVar01585084
WBVar01585085
WBVar01585086
WBVar01585087
WBVar01585088
WBVar01585089
WBVar01585076
WBVar01585077
WBVar01585078
gk963591
gk963553
gk964259
gk963850
gk963027
gk963604
WBVar02121241
WBVar02023209
WBVar00204254
WBVar00204255
WBVar00204258
WBVar00204259
WBVar00204256
WBVar00204257
WBVar00204263

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00202502 2260960 2261847 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_2261848..2262488   641 V: 2261848-2262488 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in animals exposed to 2.5mM ketamine since L1 larva stage. DESeq2 (1.20.0), fold change > 2, p-value < 0.05. WBPaper00064788:ketamine_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr1150810 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015  

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00202502 2260960 2261847 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
888

1 Sequence Ontology Term