WormMine: Gene WBGene00044902

• WormBase Gene ID: WBGene00044902
• Gene Name: Y19D10A.18
• Sequence Name: Y19D10A.18
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by dpy-21 based on RNA-seq studies. Is affected by tetrabromobisphenol A and dafa#1 based on microarray studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 756

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00044902

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

22 Allele

• gk963301
• gk963591
• gk963553
• gk964259
• gk963850
• gk963027
• gk962689
• gk962688
• gk963769
• gk963604
• WBVar01899325
• tm11002
• WBVar01899323
• WBVar02123276
• WBVar01899324
• WBVar02122642
• WBVar02121461
• WBVar02123416
• WBVar02122842
• WBVar02071119
• WBVar02121242
• WBVar02124611

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00044902
• Start: 2408274
• End: 2409029
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_2409030..2409250
• Length (nt): 221
• Chromosome Location: V: 2409030-2409250
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage.	DESeq v1.6.3. Fold change > 1.5.	WBPaper00050370:dpy-21(e428)_L3_upregulated
	Genes that showed significantly decreased experssion after 22.5 hours of treatment in 200nM delta7-dafachronic acid comparing with in ethanol vehicle control.	To identify the differentially expressed genes, we applied Significance Analysis of Microarrays (SAM) analysis using the R package samr [46]. Genes with median false discovery <5% and fold changes >2.0 were considered differentially expressed.	WBPaper00046548:dafachronic-acid_downregulated
	Genes that showed decreased expression after 0.1uM TBBP treatment comparing with control.	Differentially expressed genes (DEGs) were identified with a random variance t test and a significance analysis of microarrays (SAM) test. Genes were considered statistically significant if their p value was less than 0.05, the false discovery rate less than 0.3 and the fold change compared to control at least <= 0.67 or >= 1.5.	WBPaper00045294:0.1uM_TBBP_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00044902
• Start: 2408274
• End: 2409029
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 756

1 Sequence Ontology Term