WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E2.3e.1 Sequence Name  F54E2.3e.1
Length (nt)  15309   Chromosome Location  V: 2781939-2807860
Chromosome . Primary Identifier  V Chromosome Location . Start  2781939
Chromosome Location . End  2807860 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E2.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004130 ketn-1 F54E2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E2.3e F54E2.3e 14670   V: 2782578-2782585

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3e.1 2781939 2807860 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

27 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon175353   647   V: 2781939-2782585 Caenorhabditis elegans
Exon175366   127   V: 2782844-2782970 Caenorhabditis elegans
Exon175376   230   V: 2783023-2783252 Caenorhabditis elegans
Exon175387   748   V: 2783366-2784113 Caenorhabditis elegans
Exon175398   183   V: 2784160-2784342 Caenorhabditis elegans
Exon175416   123   V: 2784836-2784958 Caenorhabditis elegans
Exon175424   7569   V: 2785054-2792622 Caenorhabditis elegans
Exon175435   204   V: 2792670-2792873 Caenorhabditis elegans
Exon175446   195   V: 2792920-2793114 Caenorhabditis elegans
Exon175457   105   V: 2793907-2794011 Caenorhabditis elegans
Exon175468   110   V: 2794054-2794163 Caenorhabditis elegans
Exon175480   247   V: 2795251-2795497 Caenorhabditis elegans
Exon175490   158   V: 2795546-2795703 Caenorhabditis elegans
Exon175501   343   V: 2795751-2796093 Caenorhabditis elegans
Exon175513   992   V: 2797018-2798009 Caenorhabditis elegans
Exon175522   773   V: 2798058-2798830 Caenorhabditis elegans
Exon175531   160   V: 2798883-2799042 Caenorhabditis elegans
Exon175540   439   V: 2799099-2799537 Caenorhabditis elegans
Exon175551   171   V: 2800182-2800352 Caenorhabditis elegans
Exon175555   348   V: 2800401-2800748 Caenorhabditis elegans
Exon175559   198   V: 2800794-2800991 Caenorhabditis elegans
Exon175564   87   V: 2802328-2802414 Caenorhabditis elegans
Exon175568   153   V: 2806037-2806189 Caenorhabditis elegans
Exon175572   634   V: 2806238-2806871 Caenorhabditis elegans
Exon175576   170   V: 2806983-2807152 Caenorhabditis elegans
Exon175580   129   V: 2807264-2807392 Caenorhabditis elegans
Exon175584   66   V: 2807795-2807860 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3e.1 2781939 2807860 -1

1 Sequence

Length
15309

1 Sequence Ontology Term

Identifier Name Description
transcript