WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E2.3a.1 Sequence Name  F54E2.3a.1
Length (nt)  13388   Chromosome Location  V: 2781943-2800220
Chromosome . Primary Identifier  V Chromosome Location . Start  2781943
Chromosome Location . End  2800220 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E2.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004130 ketn-1 F54E2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E2.3a F54E2.3a 12753   V: 2782578-2782585

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3a.1 2781943 2800220 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon175354   643   V: 2781943-2782585 Caenorhabditis elegans
Exon175364   127   V: 2782844-2782970 Caenorhabditis elegans
Exon175374   230   V: 2783023-2783252 Caenorhabditis elegans
Exon175384   748   V: 2783366-2784113 Caenorhabditis elegans
Exon175395   183   V: 2784160-2784342 Caenorhabditis elegans
Exon175414   123   V: 2784836-2784958 Caenorhabditis elegans
Exon175421   7569   V: 2785054-2792622 Caenorhabditis elegans
Exon175432   204   V: 2792670-2792873 Caenorhabditis elegans
Exon175443   195   V: 2792920-2793114 Caenorhabditis elegans
Exon175454   105   V: 2793907-2794011 Caenorhabditis elegans
Exon175465   110   V: 2794054-2794163 Caenorhabditis elegans
Exon175477   247   V: 2795251-2795497 Caenorhabditis elegans
Exon175487   158   V: 2795546-2795703 Caenorhabditis elegans
Exon175498   343   V: 2795751-2796093 Caenorhabditis elegans
Exon175510   992   V: 2797018-2798009 Caenorhabditis elegans
Exon175519   773   V: 2798058-2798830 Caenorhabditis elegans
Exon175528   160   V: 2798883-2799042 Caenorhabditis elegans
Exon175537   439   V: 2799099-2799537 Caenorhabditis elegans
Exon175546   39   V: 2800182-2800220 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3a.1 2781943 2800220 -1

1 Sequence

Length
13388

1 Sequence Ontology Term

Identifier Name Description
transcript