WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E2.3d.1 Sequence Name  F54E2.3d.1
Length (nt)  12990   Chromosome Location  V: 2781984-2800220
Chromosome . Primary Identifier  V Chromosome Location . Start  2781984
Chromosome Location . End  2800220 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E2.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004130 ketn-1 F54E2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E2.3d F54E2.3d 12396   V: 2782578-2782585

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3d.1 2781984 2800220 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon175355   602   V: 2781984-2782585 Caenorhabditis elegans
Exon175386   748   V: 2783366-2784113 Caenorhabditis elegans
Exon175397   183   V: 2784160-2784342 Caenorhabditis elegans
Exon175415   123   V: 2784836-2784958 Caenorhabditis elegans
Exon175423   7569   V: 2785054-2792622 Caenorhabditis elegans
Exon175434   204   V: 2792670-2792873 Caenorhabditis elegans
Exon175445   195   V: 2792920-2793114 Caenorhabditis elegans
Exon175456   105   V: 2793907-2794011 Caenorhabditis elegans
Exon175467   110   V: 2794054-2794163 Caenorhabditis elegans
Exon175479   247   V: 2795251-2795497 Caenorhabditis elegans
Exon175489   158   V: 2795546-2795703 Caenorhabditis elegans
Exon175500   343   V: 2795751-2796093 Caenorhabditis elegans
Exon175512   992   V: 2797018-2798009 Caenorhabditis elegans
Exon175521   773   V: 2798058-2798830 Caenorhabditis elegans
Exon175530   160   V: 2798883-2799042 Caenorhabditis elegans
Exon175539   439   V: 2799099-2799537 Caenorhabditis elegans
Exon175548   39   V: 2800182-2800220 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3d.1 2781984 2800220 -1

1 Sequence

Length
12990

1 Sequence Ontology Term

Identifier Name Description
transcript