WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E2.3d.1 Sequence Name  F54E2.3d.1
Length (nt)  12990   Chromosome Location  V: 2781984-2800220
Chromosome . Primary Identifier  V Chromosome Location . Start  2781984
Chromosome Location . End  2800220 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E2.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004130 ketn-1 F54E2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E2.3d F54E2.3d 12396   V: 2782578-2782585

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3d.1 2781984 2800220 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon175389   602   V: 2781984-2782585 Caenorhabditis elegans
Exon175420   748   V: 2783366-2784113 Caenorhabditis elegans
Exon175431   183   V: 2784160-2784342 Caenorhabditis elegans
Exon175449   123   V: 2784836-2784958 Caenorhabditis elegans
Exon175457   7569   V: 2785054-2792622 Caenorhabditis elegans
Exon175468   204   V: 2792670-2792873 Caenorhabditis elegans
Exon175479   195   V: 2792920-2793114 Caenorhabditis elegans
Exon175490   105   V: 2793907-2794011 Caenorhabditis elegans
Exon175501   110   V: 2794054-2794163 Caenorhabditis elegans
Exon175513   247   V: 2795251-2795497 Caenorhabditis elegans
Exon175523   158   V: 2795546-2795703 Caenorhabditis elegans
Exon175534   343   V: 2795751-2796093 Caenorhabditis elegans
Exon175546   992   V: 2797018-2798009 Caenorhabditis elegans
Exon175555   773   V: 2798058-2798830 Caenorhabditis elegans
Exon175564   160   V: 2798883-2799042 Caenorhabditis elegans
Exon175573   439   V: 2799099-2799537 Caenorhabditis elegans
Exon175582   39   V: 2800182-2800220 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3d.1 2781984 2800220 -1

1 Sequence

Length
12990

1 Sequence Ontology Term

Identifier Name Description
transcript