WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023338 Gene Name  T03D3.10
Sequence Name  ? T03D3.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by lpd-3 and sir-2.1 based on RNA-seq and microarray studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 1295
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023338

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

29 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk963850
gk963027
gk962689
gk962688
tm10884
tm11497
WBVar02121464
WBVar01613790
WBVar01613791
WBVar01613792
WBVar01613789
WBVar00582834
tm8895
WBVar01775157
gk871578
gk503920
gk229465
gk229463
gk229464
WBVar01819378
gk875707
gk666655
gk343664
gk644885
gk526433

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00023338 2842946 2844240 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_2842242..2842945   704 V: 2842242-2842945 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_5
  Transcripts that showed significantly decreased expression in lpd-3(ok2138) comparing to in N2 animals. DESeq2, fold change > 4, FDR < 0.05. WBPaper00064661:lpd-3(ok2138)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00023338 2842946 2844240 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1295

1 Sequence Ontology Term