WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023339 Gene Name  T03D3.13
Sequence Name  ? T03D3.13 Organism  Caenorhabditis elegans
Automated Description  Is affected by sir-2.1 based on microarray studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 1181
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023339

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

29 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk963850
gk963027
gk962689
gk962688
WBVar01586029
WBVar01586030
otn767
WBVar00205122
WBVar00205121
tm10884
tm11497
tm10591
WBVar01613818
gk229482
gk229485
gk229486
gk229483
gk229484
gk858757
gk608775
gk652741
gk875323
gk343665
gk684906
gk758708

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00023339 2852425 2853605 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_2852029..2852424   396 V: 2852029-2852424 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Transcripts that showed significantly increased expression in daf-2(e1370) neurons comparing to in N2 neurons at day 8adult stage. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:daf-2(e1370)_upregulated_neuron
  Transcripts that showed significantly increased expression in daf-16(mu86);daf-2(e1370) neurons comparing to in daf-2(e1370) neurons at day 8adult stage. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:daf-16(mu86)_upregulated_neuron
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_9

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00023339 2852425 2853605 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1181

1 Sequence Ontology Term