WormMine: Gene WBGene00005630

• WormBase Gene ID: WBGene00005630
• Gene Name: srj-51
• Sequence Name: C31B8.10
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in OLQDL and OLQVL based on single-cell RNA-seq studies. Is affected by several genes including tph-1; sir-2.1; and ogt-1 based on RNA-seq and microarray studies.
• Biotype: SO:0000336
• Genetic Position: V :-12.8514 ±0.001376
• Length (nt): 1179

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005630

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

35 Allele

• gk963301
• gk963591
• gk963553
• gk964259
• gk963850
• gk963027
• gk962689
• gk962688
• WBVar01586111
• WBVar00205278
• WBVar00205279
• WBVar00205281
• WBVar00205280
• gk229642
• WBVar01613984
• WBVar01613985
• WBVar01738844
• WBVar01738843
• WBVar01613982
• WBVar01613983
• gk766739
• gk527274
• gk629054
• gk674653
• gk867507
• WBVar00271586
• gk665774
• gk449334
• gk774062
• gk516420

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005630
• Start: 2918830
• End: 2920008
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_2918035..2918829
• Length (nt): 795
• Chromosome Location: V: 2918035-2918829
• Organism: Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in eat-2(ad1116) comparing to in N2 at 3-days post L4 adult hermaphrodite animals.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:eat-2(ad1116)_downregulated
	Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014.	N.A.	WBPaper00026929:sir-2.1_overexpression_regulated
	Genome-wide analysis of developmental and sex-regulated gene expression profile.	self-organizing map	cgc4489_group_22
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
	Transcripts that showed significantly increased expression in tph-1(mg280);odIs77 comparing to in odIs77 control animals.	EdgeR, FDR<0.01	WBPaper00060921:tph-1(mg280)_upregulated
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2.	DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5.	WBPaper00055226:adr-1(tm668)_downregulated
	Single-cell RNA-Seq cell group 72_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:72_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005630
• Start: 2918830
• End: 2920008
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1179

1 Sequence Ontology Term