WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005873 Gene Name  srw-126
Sequence Name  ? H05B21.1 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including flcn-1; sir-2.1; and ogt-1 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  V :-12.8078 ±0.000697 Length (nt)  ? 1097
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005873

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

50 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk963850
gk963027
gk962689
gk962688
WBVar01971988
WBVar02121465
WBVar02124224
gk963327
WBVar02123279
WBVar02122847
WBVar00205365
WBVar00205364
WBVar00205363
WBVar02122645
WBVar02123123
WBVar02124615
WBVar00091232
WBVar01908844
WBVar01738906
WBVar01738907
WBVar01738905
gk540264
gk812244
gk498231
gk800823
gk456160

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00005873 2953193 2954289 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_2954290..2954403   114 V: 2954290-2954403 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated
  Transcripts that showed significantly decreased expression in eat-2(ad465) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:eat-2(ad465)_downregulated
  Transcripts that showed significantly increased expression in RB1035[flcn-1(ok975)] comparing to in N2 at young adult stage. Agilent microarray raw data were processed and quantile normalized with the marray package from the Bioconductor project. Fold change statistics and Students t-test were used to create lists of candidates for differential gene expression. WBPaper00042236:flcn-1(ok975)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00005873 2953193 2954289 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1097

1 Sequence Ontology Term