WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219257 Gene Name  mir-4922.2
Sequence Name  ? F35F10.16 Organism  Caenorhabditis elegans
Automated Description  Is affected by hrpk-1 based on RNA-seq studies. Biotype  SO:0001265
Genetic Position  V :-12.2528 ±0.00908 Length (nt)  ? 58
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219257

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F35F10.16b F35F10.16b 22   V: 3304833-3304854
 

Other

0 CDSs

0 RNAi Result

33 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk964351
gk963850
gk963027
gk962689
gk962688
WBVar02121254
gk962939
WBVar02121469
WBVar02079234
WBVar02079233
WBVar02124617
WBVar02124043
WBVar00091234
WBVar02076476
WBVar02076475
WBVar02076474
WBVar02124496
WBVar02122647
WBVar02077106
WBVar02122968
WBVar02077104
WBVar02120858
WBVar02077103
WBVar02077102
WBVar02122396
WBVar02122848

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219257 3304833 3304890 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Micro RNAs that showed significantly increased expression in hrpk-1(tm5522) comparing to in N2 at L4 larva stage. DESeq, fold change > 2, p-value <= 0.05. WBPaper00058673:hrpk-1(tm5522)_upregulated_miRNA_L4

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219257 3304833 3304890 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
58

1 Sequence Ontology Term