WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04E12.5a.1 Sequence Name  C04E12.5a.1
Length (nt)  1522   Chromosome Location  V: 3358567-3361093
Chromosome . Primary Identifier  V Chromosome Location . Start  3358567
Chromosome Location . End  3361093 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04E12.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015435 C04E12.5 C04E12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04E12.5a C04E12.5a 1446   V: 3358643-3358710

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04E12.5a.1 3358567 3361093 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon176757   144   V: 3358567-3358710 Caenorhabditis elegans
Exon176759   113   V: 3358809-3358921 Caenorhabditis elegans
Exon176761   117   V: 3358973-3359089 Caenorhabditis elegans
Exon176763   236   V: 3359142-3359377 Caenorhabditis elegans
Exon176765   129   V: 3359432-3359560 Caenorhabditis elegans
Exon176767   69   V: 3359607-3359675 Caenorhabditis elegans
Exon176769   88   V: 3359979-3360066 Caenorhabditis elegans
Exon176771   81   V: 3360277-3360357 Caenorhabditis elegans
Exon176773   254   V: 3360409-3360662 Caenorhabditis elegans
Exon176775   126   V: 3360710-3360835 Caenorhabditis elegans
Exon176777   72   V: 3360883-3360954 Caenorhabditis elegans
Exon176779   93   V: 3361001-3361093 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04E12.5a.1 3358567 3361093 1

1 Sequence

Length
1522

1 Sequence Ontology Term

Identifier Name Description
transcript