WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T20D4.5.1 Sequence Name  T20D4.5.1
Length (nt)  2084   Chromosome Location  V: 3413310-3417772
Chromosome . Primary Identifier  V Chromosome Location . Start  3413310
Chromosome Location . End  3417772 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T20D4.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020611 txt-11 T20D4.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T20D4.5 T20D4.5 2004   V: 3413344-3413405

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T20D4.5.1 3413310 3417772 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon176906   96   V: 3413310-3413405 Caenorhabditis elegans
Exon176907   110   V: 3413579-3413688 Caenorhabditis elegans
Exon176908   236   V: 3413907-3414142 Caenorhabditis elegans
Exon176909   132   V: 3414191-3414322 Caenorhabditis elegans
Exon176910   84   V: 3414369-3414452 Caenorhabditis elegans
Exon176911   85   V: 3414499-3414583 Caenorhabditis elegans
Exon176912   84   V: 3415066-3415149 Caenorhabditis elegans
Exon176913   236   V: 3415230-3415465 Caenorhabditis elegans
Exon176914   129   V: 3415510-3415638 Caenorhabditis elegans
Exon176915   69   V: 3415685-3415753 Caenorhabditis elegans
Exon176916   88   V: 3415794-3415881 Caenorhabditis elegans
Exon176917   99   V: 3415946-3416044 Caenorhabditis elegans
Exon176918   251   V: 3416854-3417104 Caenorhabditis elegans
Exon176919   132   V: 3417154-3417285 Caenorhabditis elegans
Exon176920   72   V: 3417331-3417402 Caenorhabditis elegans
Exon176921   94   V: 3417459-3417552 Caenorhabditis elegans
Exon176922   87   V: 3417686-3417772 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T20D4.5.1 3413310 3417772 1

1 Sequence

Length
2084

1 Sequence Ontology Term

Identifier Name Description
transcript