WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T20D4.3a.1 Sequence Name  T20D4.3a.1
Length (nt)  2124   Chromosome Location  V: 3418228-3422779
Chromosome . Primary Identifier  V Chromosome Location . Start  3418228
Chromosome Location . End  3422779 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T20D4.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020609 T20D4.3 T20D4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T20D4.3a T20D4.3a 2043   V: 3418263-3418324

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T20D4.3a.1 3418228 3422779 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon176978   97   V: 3418228-3418324 Caenorhabditis elegans
Exon176980   110   V: 3418500-3418609 Caenorhabditis elegans
Exon176982   51   V: 3418657-3418707 Caenorhabditis elegans
Exon176984   236   V: 3418898-3419133 Caenorhabditis elegans
Exon176986   111   V: 3419182-3419292 Caenorhabditis elegans
Exon176988   84   V: 3419357-3419440 Caenorhabditis elegans
Exon176990   85   V: 3419487-3419571 Caenorhabditis elegans
Exon176992   87   V: 3419645-3419731 Caenorhabditis elegans
Exon176994   233   V: 3420504-3420736 Caenorhabditis elegans
Exon176996   126   V: 3420781-3420906 Caenorhabditis elegans
Exon176998   69   V: 3420954-3421022 Caenorhabditis elegans
Exon177000   88   V: 3421074-3421161 Caenorhabditis elegans
Exon177002   99   V: 3421226-3421324 Caenorhabditis elegans
Exon177004   251   V: 3421857-3422107 Caenorhabditis elegans
Exon177006   132   V: 3422157-3422288 Caenorhabditis elegans
Exon177008   72   V: 3422334-3422405 Caenorhabditis elegans
Exon177010   106   V: 3422462-3422567 Caenorhabditis elegans
Exon177013   87   V: 3422693-3422779 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T20D4.3a.1 3418228 3422779 1

1 Sequence

Length
2124

1 Sequence Ontology Term

Identifier Name Description
transcript