WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T20D4.3b.1 Sequence Name  T20D4.3b.1
Length (nt)  2064   Chromosome Location  V: 3418263-3422733
Chromosome . Primary Identifier  V Chromosome Location . Start  3418263
Chromosome Location . End  3422733 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T20D4.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020609 T20D4.3 T20D4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T20D4.3b T20D4.3b 2064   V: 3418263-3418324

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T20D4.3b.1 3418263 3422733 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon176979   62   V: 3418263-3418324 Caenorhabditis elegans
Exon176981   110   V: 3418500-3418609 Caenorhabditis elegans
Exon176983   51   V: 3418657-3418707 Caenorhabditis elegans
Exon176985   236   V: 3418898-3419133 Caenorhabditis elegans
Exon176987   132   V: 3419182-3419313 Caenorhabditis elegans
Exon176989   84   V: 3419357-3419440 Caenorhabditis elegans
Exon176991   85   V: 3419487-3419571 Caenorhabditis elegans
Exon176993   87   V: 3419645-3419731 Caenorhabditis elegans
Exon176995   233   V: 3420504-3420736 Caenorhabditis elegans
Exon176997   126   V: 3420781-3420906 Caenorhabditis elegans
Exon176999   69   V: 3420954-3421022 Caenorhabditis elegans
Exon177001   88   V: 3421074-3421161 Caenorhabditis elegans
Exon177003   99   V: 3421226-3421324 Caenorhabditis elegans
Exon177005   251   V: 3421857-3422107 Caenorhabditis elegans
Exon177007   132   V: 3422157-3422288 Caenorhabditis elegans
Exon177009   72   V: 3422334-3422405 Caenorhabditis elegans
Exon177011   106   V: 3422462-3422567 Caenorhabditis elegans
Exon177012   41   V: 3422693-3422733 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T20D4.3b.1 3418263 3422733 1

1 Sequence

Length
2064

1 Sequence Ontology Term

Identifier Name Description
transcript