WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27C4.2b.1 Sequence Name  T27C4.2b.1
Length (nt)  2451   Chromosome Location  V: 3727482-3734204
Chromosome . Primary Identifier  V Chromosome Location . Start  3727482
Chromosome Location . End  3734204 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27C4.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020855 hpo-36 T27C4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27C4.2b T27C4.2b 2451   V: 3727482-3727592

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27C4.2b.1 3727482 3734204 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon177704   111   V: 3727482-3727592 Caenorhabditis elegans
Exon177706   285   V: 3727948-3728232 Caenorhabditis elegans
Exon177708   120   V: 3728644-3728763 Caenorhabditis elegans
Exon177710   298   V: 3728814-3729111 Caenorhabditis elegans
Exon177712   110   V: 3729163-3729272 Caenorhabditis elegans
Exon177714   363   V: 3729317-3729679 Caenorhabditis elegans
Exon177716   203   V: 3730287-3730489 Caenorhabditis elegans
Exon177718   91   V: 3730542-3730632 Caenorhabditis elegans
Exon177720   242   V: 3730681-3730922 Caenorhabditis elegans
Exon177724   361   V: 3733151-3733511 Caenorhabditis elegans
Exon177726   171   V: 3733756-3733926 Caenorhabditis elegans
Exon177727   96   V: 3734109-3734204 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27C4.2b.1 3727482 3734204 -1

1 Sequence

Length
2451

1 Sequence Ontology Term

Identifier Name Description
transcript