WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39H10A.2b.1 Sequence Name  Y39H10A.2b.1
Length (nt)  2229   Chromosome Location  V: 3761139-3766306
Chromosome . Primary Identifier  V Chromosome Location . Start  3761139
Chromosome Location . End  3766306 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39H10A.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021479 oac-55 Y39H10A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39H10A.2b Y39H10A.2b 2229   V: 3761139-3761285

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39H10A.2b.1 3761139 3766306 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon177712   147   V: 3761139-3761285 Caenorhabditis elegans
Exon177716   202   V: 3761539-3761740 Caenorhabditis elegans
Exon177718   136   V: 3762573-3762708 Caenorhabditis elegans
Exon177719   134   V: 3762759-3762892 Caenorhabditis elegans
Exon177722   94   V: 3762943-3763036 Caenorhabditis elegans
Exon177724   178   V: 3763093-3763270 Caenorhabditis elegans
Exon177726   94   V: 3764204-3764297 Caenorhabditis elegans
Exon177729   371   V: 3764345-3764715 Caenorhabditis elegans
Exon177732   227   V: 3764762-3764988 Caenorhabditis elegans
Exon177735   112   V: 3765351-3765462 Caenorhabditis elegans
Exon177738   116   V: 3765508-3765623 Caenorhabditis elegans
Exon177741   214   V: 3765836-3766049 Caenorhabditis elegans
Exon177743   204   V: 3766103-3766306 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39H10A.2b.1 3761139 3766306 1

1 Sequence

Length
2229

1 Sequence Ontology Term

Identifier Name Description
transcript