WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R08E5.3 Sequence Name  R08E5.3
Length (nt)  1098   Chromosome Location  V: 3772189-3772236
Chromosome . Primary Identifier  V Chromosome Location . Start  3772189
Chromosome Location . End  3772236
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08E5.3

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE12576 RIPS-1 40.4 365 Caenorhabditis elegans
 

Other

5 RNAi

WormBase ID
WBRNAi00051554
WBRNAi00017594
WBRNAi00034753
WBRNAi00117203
WBRNAi00116064

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:R08E5.3 3772189 3772236 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019963 rips-1 R08E5.3 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:R08E5.3 3772189 3772236 1
CDS:R08E5.3 3772301 3772443 1
CDS:R08E5.3 3772492 3772585 1
CDS:R08E5.3 3773575 3774081 1
CDS:R08E5.3 3774129 3774434 1

1 Sequence

Length
1098

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R08E5.3.1 R08E5.3.1 1441   V: 3772021-3774609