WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R08E5.1b Sequence Name  R08E5.1b
Length (nt)  753   Chromosome Location  V: 3769900-3770049
Chromosome . Primary Identifier  V Chromosome Location . Start  3769900
Chromosome Location . End  3770049
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08E5.1b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE42393 R08E5.1, isoform b 28.0 250 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00051552
WBRNAi00017592
WBRNAi00034752
WBRNAi00116065

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:R08E5.1b 3769900 3770049 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019961 R08E5.1 R08E5.1 Caenorhabditis elegans

3 Locations


Feature . Primary Identifier
Start End Strand
CDS:R08E5.1b 3769900 3770049 -1
CDS:R08E5.1b 3770425 3770931 -1
CDS:R08E5.1b 3770984 3771079 -1

1 Sequence

Length
753

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R08E5.1b.2 R08E5.1b.2 1285   V: 3769798-3771509
Transcript:R08E5.1b.4 R08E5.1b.4 1034   V: 3769807-3771308
Transcript:R08E5.1b.3 R08E5.1b.3 1011   V: 3769900-3771491
Transcript:R08E5.1b.1 R08E5.1b.1 975   V: 3769900-3771518