WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00194990 Gene Name  B0213.23
Sequence Name  ? B0213.23 Organism  Caenorhabditis elegans
Automated Description  Is affected by dpy-21 and hmg-3 based on RNA-seq studies. Is affected by CGP37157 based on RNA-seq studies. Biotype  SO:0001268
Genetic Position  Length (nt)  ? 105
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00194990

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:B0213.23 B0213.23 105   V: 3962607-3962711
 

Other

0 CDSs

3 RNAi Result

WormBase ID
WBRNAi00009583
WBRNAi00027988
WBRNAi00092677

16 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk964351
gk963850
WBVar01587846
gk963027
WBVar02122021
gk964431
WBVar02123284
gk962826
gk962867
gk964442
tm10693
gk231919

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00194990 3962607 3962711 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in BAT525 [hmg-3 (tm2539) / dpy-5(e61) unc-13(e1091) I.] comparing to in N2 at 1-day post L4 adult hermaphrodite stage. DESeq 2, fold change > 4, adjusted p-value < 0.05. WBPaper00055013:hmg-3(bar24)_upregulated
  Transcripts that showed significantly decreased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_downregulated
  Transcripts that showed significantly increased expression after treated by 50uM CGP37157 (7-chloro-5-(2-chlorophenyl)-1,5-dihydro-4,1-benzothiazepin-2-one) for 5 days starting from young adult stage. DESeq fold change > 2, p-value < 0.05 WBPaper00061590:CGP37157_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00194990 3962607 3962711 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
105

1 Sequence Ontology Term