WormMine: Gene WBGene00005232

• WormBase Gene ID: WBGene00005232
• Gene Name: srh-6
• Sequence Name: K09D9.4
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including mrps-5; ilc-17.1; and ogt-1 based on microarray and RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: V :-7.04695 ±0.00218
• Length (nt): 1352

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005232

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

32 Allele

• WBVar01860616
• gk963301
• gk963591
• gk963553
• gk964259
• gk964351
• gk963850
• WBVar02122021
• gk964431
• gk964097
• gk406856
• gk623805
• gk591803
• gk346985
• gk317891
• gk691958
• gk455045
• gk806163
• gk445915
• gk468321
• gk344702
• gk635806
• gk686297
• gk948095
• gk961408
• gk964123
• gk232017
• WBVar02004629
• WBVar01675520
• WBVar01675522

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005232
• Start: 4015587
• End: 4016938
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_4016939..4017079
• Length (nt): 141
• Chromosome Location: V: 4016939-4017079
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_downregulated
	Transcripts that showed significantly decreased expression in eat-2(ad465) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:eat-2(ad465)_downregulated
	Transcripts that showed significantly decreased expression in mrps-5(RNAi) comparing to in control animals.	Fold change > 4, p-value < 0.01	WBPaper00056330:mrps-5(RNAi)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005232
• Start: 4015587
• End: 4016938
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1352

1 Sequence Ontology Term