WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00269426 Gene Name  C49G7.14
Sequence Name  ? C49G7.14 Organism  Caenorhabditis elegans
Automated Description  Enriched in dorsal uterine cell; excretory cell; and vulval cell based on single-cell RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 911
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00269426

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

17 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk964351
gk963850
WBVar02122021
gk964431
gk325634
WBVar02124816
WBVar02122649
WBVar01940736
WBVar02121260
WBVar01739327
WBVar01739328
WBVar02123285
WBVar01807796

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00269426 4051417 4052327 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_4052328..4054073   1746 V: 4052328-4054073 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Heat shock: 35C for 1 hour. Transcripts that showed significantly increased expression immediately after 1-day post L4 adult hermaphrodite endu-2(tm4977) animals were exposed to 35C for 1 hour. The DESeq2 (GalaxyVersion 2.11.40.6 + galaxy1) was used to determine differentiallyexpressed features from count tables of differential transcript abundances. log2FC > 1, FDR < 0.01. WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
Heat shock: 35C for 1 hour. Transcripts that showed significantly increased expression immediately after 1-day post L4 adult hermaphrodite N2 animals were exposed to 35C for 1 hour. The DESeq2 (GalaxyVersion 2.11.40.6 + galaxy1) was used to determine differentiallyexpressed features from count tables of differential transcript abundances. log2FC > 1, FDR < 0.01. WBPaper00065749:Heat-Shock_upregulated_N2
  Single-cell RNA-Seq cell group 11_0 expressed in vulva. scVI 0.6.0 WBPaper00065841:11_0
  Single-cell RNA-Seq cell group 79_1 expressed in excretory. scVI 0.6.0 WBPaper00065841:79_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00269426 4051417 4052327 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
911

1 Sequence Ontology Term