WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196319 Gene Name  Y45G5AM.10
Sequence Name  ? Y45G5AM.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 114
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196319

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y45G5AM.10 Y45G5AM.10 114   V: 4161612-4161725
 

Other

0 CDSs

0 RNAi Result

16 Allele

Public Name
gk963301
WBVar01860965
gk963591
gk963553
gk964259
gk964351
gk963850
WBVar02124229
WBVar02122021
gk964431
WBVar01676760
WBVar02115267
WBVar01676761
gk441634
gk424270
WBVar02098650

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00196319 4161612 4161725 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_4161726..4163221   1496 V: 4161726-4163221 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00196319 4161612 4161725 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
114

1 Sequence Ontology Term