WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y45G5AM.2a.1 Sequence Name  Y45G5AM.2a.1
Length (nt)  3439   Chromosome Location  V: 4175882-4181360
Chromosome . Primary Identifier  V Chromosome Location . Start  4175882
Chromosome Location . End  4181360 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y45G5AM.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021555 pid-5 Y45G5AM.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y45G5AM.2a Y45G5AM.2a 3186   V: 4175924-4176008

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y45G5AM.2a.1 4175882 4181360 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon178620   127   V: 4175882-4176008 Caenorhabditis elegans
Exon178622   144   V: 4176059-4176202 Caenorhabditis elegans
Exon178625   101   V: 4176251-4176351 Caenorhabditis elegans
Exon178628   210   V: 4176413-4176622 Caenorhabditis elegans
Exon178631   531   V: 4176662-4177192 Caenorhabditis elegans
Exon178634   144   V: 4177978-4178121 Caenorhabditis elegans
Exon178639   113   V: 4178169-4178281 Caenorhabditis elegans
Exon178642   139   V: 4178974-4179112 Caenorhabditis elegans
Exon178646   499   V: 4179159-4179657 Caenorhabditis elegans
Exon178650   365   V: 4179725-4180089 Caenorhabditis elegans
Exon178654   140   V: 4180139-4180278 Caenorhabditis elegans
Exon178658   362   V: 4180330-4180691 Caenorhabditis elegans
Exon178662   173   V: 4180745-4180917 Caenorhabditis elegans
Exon178669   391   V: 4180970-4181360 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y45G5AM.2a.1 4175882 4181360 1

1 Sequence

Length
3439

1 Sequence Ontology Term

Identifier Name Description
transcript