WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y45G5AM.2c.1 Sequence Name  Y45G5AM.2c.1
Length (nt)  3012   Chromosome Location  V: 4176148-4181149
Chromosome . Primary Identifier  V Chromosome Location . Start  4176148
Chromosome Location . End  4181149 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y45G5AM.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021555 pid-5 Y45G5AM.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y45G5AM.2c Y45G5AM.2c 3012   V: 4176148-4176202

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y45G5AM.2c.1 4176148 4181149 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon178603   55   V: 4176148-4176202 Caenorhabditis elegans
Exon178605   101   V: 4176251-4176351 Caenorhabditis elegans
Exon178608   210   V: 4176413-4176622 Caenorhabditis elegans
Exon178611   531   V: 4176662-4177192 Caenorhabditis elegans
Exon178614   144   V: 4177978-4178121 Caenorhabditis elegans
Exon178619   113   V: 4178169-4178281 Caenorhabditis elegans
Exon178622   139   V: 4178974-4179112 Caenorhabditis elegans
Exon178626   499   V: 4179159-4179657 Caenorhabditis elegans
Exon178630   365   V: 4179725-4180089 Caenorhabditis elegans
Exon178634   140   V: 4180139-4180278 Caenorhabditis elegans
Exon178638   362   V: 4180330-4180691 Caenorhabditis elegans
Exon178642   173   V: 4180745-4180917 Caenorhabditis elegans
Exon178645   180   V: 4180970-4181149 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y45G5AM.2c.1 4176148 4181149 1

1 Sequence

Length
3012

1 Sequence Ontology Term

Identifier Name Description
transcript