WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y45G5AM.8a.1 Sequence Name  Y45G5AM.8a.1
Length (nt)  2053   Chromosome Location  V: 4169912-4175640
Chromosome . Primary Identifier  V Chromosome Location . Start  4169912
Chromosome Location . End  4175640 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y45G5AM.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021560 coh-4 Y45G5AM.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y45G5AM.8a Y45G5AM.8a 1830   V: 4170120-4170238

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y45G5AM.8a.1 4169912 4175640 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon178630   327   V: 4169912-4170238 Caenorhabditis elegans
Exon178633   104   V: 4170288-4170391 Caenorhabditis elegans
Exon178636   111   V: 4171530-4171640 Caenorhabditis elegans
Exon178639   105   V: 4171689-4171793 Caenorhabditis elegans
Exon178642   341   V: 4172412-4172752 Caenorhabditis elegans
Exon178646   180   V: 4172806-4172985 Caenorhabditis elegans
Exon178649   277   V: 4173956-4174232 Caenorhabditis elegans
Exon178650   161   V: 4174882-4175042 Caenorhabditis elegans
Exon178651   167   V: 4175095-4175261 Caenorhabditis elegans
Exon178652   203   V: 4175316-4175518 Caenorhabditis elegans
Exon178653   77   V: 4175564-4175640 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y45G5AM.8a.1 4169912 4175640 -1

1 Sequence

Length
2053

1 Sequence Ontology Term

Identifier Name Description
transcript