WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y47D7A.16a Sequence Name  Y47D7A.16a
Length (nt)  1284   Chromosome Location  V: 4439162-4439245
Chromosome . Primary Identifier  V Chromosome Location . Start  4439162
Chromosome Location . End  4439245
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D7A.16a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE47043 RFT-1, isoform a 47.0 427 Caenorhabditis elegans
 

Other

7 RNAi

WormBase ID
WBRNAi00009346
WBRNAi00056781
WBRNAi00071824
WBRNAi00071525
WBRNAi00116263
WBRNAi00084278
WBRNAi00116310

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y47D7A.16a 4439162 4439245 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00044637 rft-1 Y47D7A.16 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y47D7A.16a 4439162 4439245 -1
CDS:Y47D7A.16a 4440177 4440296 -1
CDS:Y47D7A.16a 4440346 4440549 -1
CDS:Y47D7A.16a 4440855 4441002 -1
CDS:Y47D7A.16a 4441457 4441546 -1
CDS:Y47D7A.16a 4441592 4441961 -1
CDS:Y47D7A.16a 4442301 4442415 -1
CDS:Y47D7A.16a 4442937 4443089 -1

1 Sequence

Length
1284

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y47D7A.16a.1 Y47D7A.16a.1 1648   V: 4438932-4443223