WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F12.3b.1 Sequence Name  T28F12.3b.1
Length (nt)  5224   Chromosome Location  V: 4516947-4549279
Chromosome . Primary Identifier  V Chromosome Location . Start  4516947
Chromosome Location . End  4549279 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F12.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004947 sos-1 T28F12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F12.3b T28F12.3b 4482   V: 4517689-4517811

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T28F12.3b.1 4516947 4549279 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon179327   865   V: 4516947-4517811 Caenorhabditis elegans
Exon179329   121   V: 4518431-4518551 Caenorhabditis elegans
Exon179331   175   V: 4518599-4518773 Caenorhabditis elegans
Exon179333   264   V: 4519908-4520171 Caenorhabditis elegans
Exon179336   280   V: 4521760-4522039 Caenorhabditis elegans
Exon179338   123   V: 4522469-4522591 Caenorhabditis elegans
Exon179341   135   V: 4536192-4536326 Caenorhabditis elegans
Exon179343   420   V: 4537162-4537581 Caenorhabditis elegans
Exon179345   129   V: 4539158-4539286 Caenorhabditis elegans
Exon179347   81   V: 4539335-4539415 Caenorhabditis elegans
Exon179349   1054   V: 4540666-4541719 Caenorhabditis elegans
Exon179351   79   V: 4542422-4542500 Caenorhabditis elegans
Exon179353   250   V: 4542555-4542804 Caenorhabditis elegans
Exon179355   399   V: 4543528-4543926 Caenorhabditis elegans
Exon179357   252   V: 4545865-4546116 Caenorhabditis elegans
Exon179359   303   V: 4547570-4547872 Caenorhabditis elegans
Exon179361   87   V: 4548824-4548910 Caenorhabditis elegans
Exon179363   87   V: 4549021-4549107 Caenorhabditis elegans
Exon179364   120   V: 4549160-4549279 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T28F12.3b.1 4516947 4549279 -1

1 Sequence

Length
5224

1 Sequence Ontology Term

Identifier Name Description
transcript