WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00006243 Gene Name  str-210
Sequence Name  ? F26G5.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  V :-3.67622 ±0.001152 Length (nt)  ? 2638
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00006243

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

40 Allele

Public Name
gk963301
WBVar02060023
gk963591
gk963553
gk964259
gk964351
gk963850
WBVar01861938
WBVar01861937
gk938154
gk369759
gk687687
gk557286
gk638340
gk592809
gk408732
gk440885
gk860165
gk823427
gk341186
gk895635
gk516439
gk836491
WBVar01651115
WBVar01651117
WBVar01651116
WBVar01651119
WBVar01651118
WBVar02121782
gk963920

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00006243 4945662 4948299 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_4944897..4945661   765 V: 4944897-4945661 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00006243 4945662 4948299 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
2638

1 Sequence Ontology Term