WormMine: Gene WBGene00198478

• WormBase Gene ID: WBGene00198478
• Gene Name: Y58A7A.11
• Sequence Name: Y58A7A.11
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by ifo-1 and ogt-1 based on microarray and RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 63

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00198478

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y58A7A.11	Y58A7A.11	63	V: 5066584-5066646

Other

0 CDSs

0 RNAi Result

8 Allele

• gk963301
• gk963591
• gk963553
• gk964259
• gk964351
• gk963850
• WBVar02124047
• WBVar02121475

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00198478
• Start: 5066584
• End: 5066646
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_5064812..5066583
• Length (nt): 1772
• Chromosome Location: V: 5064812-5066583
• Organism: Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
	Transcripts that showed significantly decreased expression in ifo-1(kc2) comparing to in N2 animals.	ANOVA, p-value < 0.05.	WBPaper00056167:ifo-1(kc2)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00198478
• Start: 5066584
• End: 5066646
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 63

1 Sequence Ontology Term