WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C10G8.5b.1 Sequence Name  C10G8.5b.1
Length (nt)  3557   Chromosome Location  V: 5303689-5311244
Chromosome . Primary Identifier  V Chromosome Location . Start  5303689
Chromosome Location . End  5311244 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C10G8.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003567 ncx-2 C10G8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C10G8.5b C10G8.5b 2778   V: 5303693-5303823

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C10G8.5b.1 5303689 5311244 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon180794   135   V: 5303689-5303823 Caenorhabditis elegans
Exon180798   277   V: 5304705-5304981 Caenorhabditis elegans
Exon180801   405   V: 5305464-5305868 Caenorhabditis elegans
Exon180804   134   V: 5305916-5306049 Caenorhabditis elegans
Exon180807   112   V: 5306099-5306210 Caenorhabditis elegans
Exon180809   113   V: 5306519-5306631 Caenorhabditis elegans
Exon180813   432   V: 5306715-5307146 Caenorhabditis elegans
Exon180817   81   V: 5307661-5307741 Caenorhabditis elegans
Exon180820   101   V: 5307786-5307886 Caenorhabditis elegans
Exon180824   96   V: 5308079-5308174 Caenorhabditis elegans
Exon180831   122   V: 5308802-5308923 Caenorhabditis elegans
Exon180835   684   V: 5308971-5309654 Caenorhabditis elegans
Exon180838   865   V: 5310380-5311244 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C10G8.5b.1 5303689 5311244 1

1 Sequence

Length
3557

1 Sequence Ontology Term

Identifier Name Description
transcript