WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00199626 Gene Name  ZC317.8
Sequence Name  ? ZC317.8 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 217
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00199626

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:ZC317.8 ZC317.8 217   V: 5456490-5456706
 

Other

0 CDSs

0 RNAi Result

11 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk964351
gk963850
gk964183
gk964184
tm10330
gk565797
WBVar02043346

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00199626 5456490 5456706 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_5453716..5456489   2774 V: 5453716-5456489 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00199626 5456490 5456706 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
217

1 Sequence Ontology Term