WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C24G6.2a.1 Sequence Name  C24G6.2a.1
Length (nt)  2940   Chromosome Location  V: 5523727-5530733
Chromosome . Primary Identifier  V Chromosome Location . Start  5523727
Chromosome Location . End  5530733 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C24G6.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016059 hir-1 C24G6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C24G6.2a C24G6.2a 2712   V: 5523754-5523876

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C24G6.2a.1 5523727 5530733 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon181239   150   V: 5523727-5523876 Caenorhabditis elegans
Exon181241   72   V: 5524771-5524842 Caenorhabditis elegans
Exon181244   186   V: 5524899-5525084 Caenorhabditis elegans
Exon181247   183   V: 5525138-5525320 Caenorhabditis elegans
Exon181251   73   V: 5525844-5525916 Caenorhabditis elegans
Exon181254   101   V: 5526352-5526452 Caenorhabditis elegans
Exon181257   87   V: 5526504-5526590 Caenorhabditis elegans
Exon181260   79   V: 5526642-5526720 Caenorhabditis elegans
Exon181263   95   V: 5526799-5526893 Caenorhabditis elegans
Exon181266   231   V: 5526941-5527171 Caenorhabditis elegans
Exon181269   169   V: 5527736-5527904 Caenorhabditis elegans
Exon181273   190   V: 5528447-5528636 Caenorhabditis elegans
Exon181276   270   V: 5528687-5528956 Caenorhabditis elegans
Exon181279   235   V: 5529013-5529247 Caenorhabditis elegans
Exon181282   141   V: 5529289-5529429 Caenorhabditis elegans
Exon181285   212   V: 5529476-5529687 Caenorhabditis elegans
Exon181288   169   V: 5529742-5529910 Caenorhabditis elegans
Exon181292   297   V: 5530437-5530733 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C24G6.2a.1 5523727 5530733 1

1 Sequence

Length
2940

1 Sequence Ontology Term

Identifier Name Description
transcript