WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C18C4.2.1 Sequence Name  C18C4.2.1
Length (nt)  3881   Chromosome Location  V: 5538800-5545789
Chromosome . Primary Identifier  V Chromosome Location . Start  5538800
Chromosome Location . End  5545789 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C18C4.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000477 cft-1 C18C4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C18C4.2 C18C4.2 3744   V: 5538800-5539019

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C18C4.2.1 5538800 5545789 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon181372   220   V: 5538800-5539019 Caenorhabditis elegans
Exon181373   213   V: 5539068-5539280 Caenorhabditis elegans
Exon181374   74   V: 5539327-5539400 Caenorhabditis elegans
Exon181375   255   V: 5539665-5539919 Caenorhabditis elegans
Exon181376   132   V: 5539968-5540099 Caenorhabditis elegans
Exon181377   72   V: 5540301-5540372 Caenorhabditis elegans
Exon181378   147   V: 5540428-5540574 Caenorhabditis elegans
Exon181379   390   V: 5540627-5541016 Caenorhabditis elegans
Exon181380   75   V: 5541921-5541995 Caenorhabditis elegans
Exon181381   135   V: 5542043-5542177 Caenorhabditis elegans
Exon181382   217   V: 5542228-5542444 Caenorhabditis elegans
Exon181383   306   V: 5542496-5542801 Caenorhabditis elegans
Exon181384   155   V: 5542855-5543009 Caenorhabditis elegans
Exon181385   276   V: 5543484-5543759 Caenorhabditis elegans
Exon181386   120   V: 5543811-5543930 Caenorhabditis elegans
Exon181387   93   V: 5543977-5544069 Caenorhabditis elegans
Exon181388   167   V: 5544154-5544320 Caenorhabditis elegans
Exon181389   235   V: 5544374-5544608 Caenorhabditis elegans
Exon181390   356   V: 5544655-5545010 Caenorhabditis elegans
Exon181391   243   V: 5545547-5545789 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C18C4.2.1 5538800 5545789 1

1 Sequence

Length
3881

1 Sequence Ontology Term

Identifier Name Description
transcript