WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C18C4.7c.1 Sequence Name  C18C4.7c.1
Length (nt)  3459   Chromosome Location  V: 5550641-5564684
Chromosome . Primary Identifier  V Chromosome Location . Start  5550641
Chromosome Location . End  5564684 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C18C4.7c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015968 C18C4.7 C18C4.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C18C4.7c C18C4.7c 3459   V: 5550641-5550695

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C18C4.7c.1 5550641 5564684 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon181355   55   V: 5550641-5550695 Caenorhabditis elegans
Exon181359   138   V: 5550743-5550880 Caenorhabditis elegans
Exon181370   72   V: 5551611-5551682 Caenorhabditis elegans
Exon181377   117   V: 5551773-5551889 Caenorhabditis elegans
Exon181387   134   V: 5551941-5552074 Caenorhabditis elegans
Exon181397   788   V: 5552138-5552925 Caenorhabditis elegans
Exon181407   118   V: 5552982-5553099 Caenorhabditis elegans
Exon181417   463   V: 5553148-5553610 Caenorhabditis elegans
Exon181427   353   V: 5553926-5554278 Caenorhabditis elegans
Exon181437   126   V: 5554353-5554478 Caenorhabditis elegans
Exon181447   241   V: 5554526-5554766 Caenorhabditis elegans
Exon181457   251   V: 5554903-5555153 Caenorhabditis elegans
Exon181467   171   V: 5555687-5555857 Caenorhabditis elegans
Exon181477   118   V: 5555906-5556023 Caenorhabditis elegans
Exon181487   71   V: 5557233-5557303 Caenorhabditis elegans
Exon181517   81   V: 5564318-5564398 Caenorhabditis elegans
Exon181524   144   V: 5564472-5564615 Caenorhabditis elegans
Exon181528   18   V: 5564667-5564684 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C18C4.7c.1 5550641 5564684 -1

1 Sequence

Length
3459

1 Sequence Ontology Term

Identifier Name Description
transcript