WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01C2.1.1 Sequence Name  T01C2.1.1
Length (nt)  3265   Chromosome Location  V: 5624727-5630892
Chromosome . Primary Identifier  V Chromosome Location . Start  5624727
Chromosome Location . End  5630892 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01C2.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000071 acy-4 T01C2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01C2.1 T01C2.1 3042   V: 5624936-5625079

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T01C2.1.1 5624727 5630892 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon181709   353   V: 5624727-5625079 Caenorhabditis elegans
Exon181710   237   V: 5625341-5625577 Caenorhabditis elegans
Exon181711   363   V: 5625626-5625988 Caenorhabditis elegans
Exon181712   118   V: 5626039-5626156 Caenorhabditis elegans
Exon181713   80   V: 5626215-5626294 Caenorhabditis elegans
Exon181714   132   V: 5626341-5626472 Caenorhabditis elegans
Exon181716   84   V: 5626522-5626605 Caenorhabditis elegans
Exon181717   168   V: 5627018-5627185 Caenorhabditis elegans
Exon181718   213   V: 5627228-5627440 Caenorhabditis elegans
Exon181719   199   V: 5627486-5627684 Caenorhabditis elegans
Exon181720   399   V: 5628189-5628587 Caenorhabditis elegans
Exon181721   171   V: 5629079-5629249 Caenorhabditis elegans
Exon181722   101   V: 5629291-5629391 Caenorhabditis elegans
Exon181723   78   V: 5629443-5629520 Caenorhabditis elegans
Exon181724   93   V: 5629573-5629665 Caenorhabditis elegans
Exon181725   78   V: 5629720-5629797 Caenorhabditis elegans
Exon181726   99   V: 5629848-5629946 Caenorhabditis elegans
Exon181727   181   V: 5630002-5630182 Caenorhabditis elegans
Exon181729   118   V: 5630775-5630892 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T01C2.1.1 5624727 5630892 -1

1 Sequence

Length
3265

1 Sequence Ontology Term

Identifier Name Description
transcript