WormMine: Gene WBGene00198490

• WormBase Gene ID: WBGene00198490
• Gene Name: ZC250.9
• Sequence Name: ZC250.9
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by ilc-17.1 based on RNA-seq studies. Is affected by iron oxide nanoparticle based on microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 228

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00198490

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:ZC250.9	ZC250.9	228	V: 5821621-5821848

Other

0 CDSs

0 RNAi Result

11 Allele

• gk963301
• gk963591
• gk963553
• gk964259
• gk964351
• gk963850
• WBVar02090722
• h18253
• gk963627
• WBVar01997984
• gk963626

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00198490
• Start: 5821621
• End: 5821848
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_5818832..5821620
• Length (nt): 2789
• Chromosome Location: V: 5818832-5821620
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
Bacteria: C.neoformans strain H99	Transcripts that showed significantly increased expression after infection by C. neoformans H99.	Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05.	WBPaper00059754:C.neoformans_H99_upregulated
	Most up-regulated genes after Cit-SPIONs exposure (p<0.01).	Past 3.03 was used for all statistical analyses. Statistical significance between two groups was assessed by t tests. A gene is determined to be differentially expressed when p < 0.01 and only 75 genes were selected as differentially regulated for each expression cluster.	WBPaper00051437:Cit-SPIONs_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00198490
• Start: 5821621
• End: 5821848
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 228

1 Sequence Ontology Term