WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04E6.11a.1 Sequence Name  C04E6.11a.1
Length (nt)  3203   Chromosome Location  V: 5914093-5917891
Chromosome . Primary Identifier  V Chromosome Location . Start  5914093
Chromosome Location . End  5917891 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04E6.11a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015425 lrpr-1 C04E6.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04E6.11a C04E6.11a 2988   V: 5914227-5914335

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04E6.11a.1 5914093 5917891 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon182252   243   V: 5914093-5914335 Caenorhabditis elegans
Exon182254   127   V: 5914382-5914508 Caenorhabditis elegans
Exon182256   294   V: 5914558-5914851 Caenorhabditis elegans
Exon182258   936   V: 5914898-5915833 Caenorhabditis elegans
Exon182260   119   V: 5915888-5916006 Caenorhabditis elegans
Exon182262   156   V: 5916059-5916214 Caenorhabditis elegans
Exon182264   118   V: 5916266-5916383 Caenorhabditis elegans
Exon182266   385   V: 5916428-5916812 Caenorhabditis elegans
Exon182268   299   V: 5916877-5917175 Caenorhabditis elegans
Exon182270   144   V: 5917229-5917372 Caenorhabditis elegans
Exon182272   121   V: 5917422-5917542 Caenorhabditis elegans
Exon182274   106   V: 5917587-5917692 Caenorhabditis elegans
Exon182277   155   V: 5917737-5917891 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04E6.11a.1 5914093 5917891 -1

1 Sequence

Length
3203

1 Sequence Ontology Term

Identifier Name Description
transcript