WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04E6.11b.1 Sequence Name  C04E6.11b.1
Length (nt)  3146   Chromosome Location  V: 5914097-5917835
Chromosome . Primary Identifier  V Chromosome Location . Start  5914097
Chromosome Location . End  5917835 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04E6.11b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015425 lrpr-1 C04E6.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04E6.11b C04E6.11b 2991   V: 5914227-5914335

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04E6.11b.1 5914097 5917835 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon182274   239   V: 5914097-5914335 Caenorhabditis elegans
Exon182276   127   V: 5914382-5914508 Caenorhabditis elegans
Exon182278   294   V: 5914558-5914851 Caenorhabditis elegans
Exon182280   936   V: 5914898-5915833 Caenorhabditis elegans
Exon182282   119   V: 5915888-5916006 Caenorhabditis elegans
Exon182284   156   V: 5916059-5916214 Caenorhabditis elegans
Exon182286   118   V: 5916266-5916383 Caenorhabditis elegans
Exon182288   388   V: 5916428-5916815 Caenorhabditis elegans
Exon182290   299   V: 5916877-5917175 Caenorhabditis elegans
Exon182292   144   V: 5917229-5917372 Caenorhabditis elegans
Exon182294   121   V: 5917422-5917542 Caenorhabditis elegans
Exon182296   106   V: 5917587-5917692 Caenorhabditis elegans
Exon182297   99   V: 5917737-5917835 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04E6.11b.1 5914097 5917835 -1

1 Sequence

Length
3146

1 Sequence Ontology Term

Identifier Name Description
transcript