WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C10F3.4a Sequence Name  C10F3.4a
Length (nt)  1377   Chromosome Location  V: 5964963-5965031
Chromosome . Primary Identifier  V Chromosome Location . Start  5964963
Chromosome Location . End  5965031
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C10F3.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE30723 MCP-1, isoform a 52.7 458 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00000681
WBRNAi00040304
WBRNAi00010602
WBRNAi00028782

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
CDS:C10F3.4a 5964963 5965031 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015678 mcp-1 C10F3.4 Caenorhabditis elegans

11 Locations


Feature . Primary Identifier 		Start End Strand
CDS:C10F3.4a 5964963 5965031 1
CDS:C10F3.4a 5966493 5966639 1
CDS:C10F3.4a 5967313 5967426 1
CDS:C10F3.4a 5967595 5967702 1
CDS:C10F3.4a 5967755 5968054 1
CDS:C10F3.4a 5968102 5968217 1
CDS:C10F3.4a 5968303 5968383 1
CDS:C10F3.4a 5968427 5968581 1
CDS:C10F3.4a 5968705 5968793 1
CDS:C10F3.4a 5968847 5968924 1
CDS:C10F3.4a 5968982 5969101 1

1 Sequence

Length
1377

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C10F3.4a.2 C10F3.4a.2 1590   V: 5961807-5969175
Transcript:C10F3.4a.1 C10F3.4a.1 1471   V: 5964941-5969173