WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38A10A.2.1 Sequence Name  Y38A10A.2.1
Length (nt)  2015   Chromosome Location  V: 6057366-6063430
Chromosome . Primary Identifier  V Chromosome Location . Start  6057366
Chromosome Location . End  6063430 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38A10A.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021389 Y38A10A.2 Y38A10A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38A10A.2 Y38A10A.2 1800   V: 6057576-6057618

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38A10A.2.1 6057366 6063430 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon182654   253   V: 6057366-6057618 Caenorhabditis elegans
Exon182655   122   V: 6057673-6057794 Caenorhabditis elegans
Exon182656   214   V: 6057854-6058067 Caenorhabditis elegans
Exon182657   124   V: 6058116-6058239 Caenorhabditis elegans
Exon182658   113   V: 6058286-6058398 Caenorhabditis elegans
Exon182659   126   V: 6058468-6058593 Caenorhabditis elegans
Exon182660   84   V: 6058638-6058721 Caenorhabditis elegans
Exon182661   125   V: 6058864-6058988 Caenorhabditis elegans
Exon182662   113   V: 6059036-6059148 Caenorhabditis elegans
Exon182663   208   V: 6059196-6059403 Caenorhabditis elegans
Exon182664   214   V: 6059855-6060068 Caenorhabditis elegans
Exon182665   93   V: 6060119-6060211 Caenorhabditis elegans
Exon182666   88   V: 6062565-6062652 Caenorhabditis elegans
Exon182667   138   V: 6063293-6063430 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38A10A.2.1 6057366 6063430 -1

1 Sequence

Length
2015

1 Sequence Ontology Term

Identifier Name Description
transcript