WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W06H8.8l.1 Sequence Name  W06H8.8l.1
Length (nt)  23532   Chromosome Location  V: 6121577-6160654
Chromosome . Primary Identifier  V Chromosome Location . Start  6121577
Chromosome Location . End  6160654 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W06H8.8l.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006436 ttn-1 W06H8.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W06H8.8l W06H8.8l 23532   V: 6121577-6121636

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:W06H8.8l.1 6121577 6160654 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

30 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon182790   60   V: 6121577-6121636 Caenorhabditis elegans
Exon182803   68   V: 6121683-6121750 Caenorhabditis elegans
Exon182814   147   V: 6121812-6121958 Caenorhabditis elegans
Exon182827   80   V: 6122005-6122084 Caenorhabditis elegans
Exon182840   66   V: 6122133-6122198 Caenorhabditis elegans
Exon182853   140   V: 6122247-6122386 Caenorhabditis elegans
Exon182866   173   V: 6122431-6122603 Caenorhabditis elegans
Exon182879   109   V: 6122651-6122759 Caenorhabditis elegans
Exon182892   163   V: 6122810-6122972 Caenorhabditis elegans
Exon182905   62   V: 6123038-6123099 Caenorhabditis elegans
Exon182918   118   V: 6123145-6123262 Caenorhabditis elegans
Exon182931   107   V: 6123307-6123413 Caenorhabditis elegans
Exon182944   111   V: 6123465-6123575 Caenorhabditis elegans
Exon182957   84   V: 6123642-6123725 Caenorhabditis elegans
Exon182970   5414   V: 6123771-6129184 Caenorhabditis elegans
Exon182983   172   V: 6129229-6129400 Caenorhabditis elegans
Exon183003   1083   V: 6129584-6130666 Caenorhabditis elegans
Exon183016   135   V: 6130915-6131049 Caenorhabditis elegans
Exon183033   123   V: 6133050-6133172 Caenorhabditis elegans
Exon183046   71   V: 6134453-6134523 Caenorhabditis elegans
Exon183144   159   V: 6144022-6144180 Caenorhabditis elegans
Exon183157   216   V: 6144360-6144575 Caenorhabditis elegans
Exon183170   4345   V: 6144977-6149321 Caenorhabditis elegans
Exon183183   234   V: 6149443-6149676 Caenorhabditis elegans
Exon183196   3798   V: 6149891-6153688 Caenorhabditis elegans
Exon183209   114   V: 6153899-6154012 Caenorhabditis elegans
Exon183222   680   V: 6154121-6154800 Caenorhabditis elegans
Exon183226   151   V: 6154949-6155099 Caenorhabditis elegans
Exon183230   849   V: 6155145-6155993 Caenorhabditis elegans
Exon183234   4500   V: 6156155-6160654 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:W06H8.8l.1 6121577 6160654 -1

1 Sequence

Length
23532

1 Sequence Ontology Term

Identifier Name Description
transcript