WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W06H8.8n.1 Sequence Name  W06H8.8n.1
Length (nt)  23448   Chromosome Location  V: 6121593-6160654
Chromosome . Primary Identifier  V Chromosome Location . Start  6121593
Chromosome Location . End  6160654 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W06H8.8n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006436 ttn-1 W06H8.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W06H8.8n W06H8.8n 23448   V: 6121593-6121636

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:W06H8.8n.1 6121593 6160654 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon182740   44   V: 6121593-6121636 Caenorhabditis elegans
Exon182761   147   V: 6121812-6121958 Caenorhabditis elegans
Exon182774   80   V: 6122005-6122084 Caenorhabditis elegans
Exon182787   66   V: 6122133-6122198 Caenorhabditis elegans
Exon182800   140   V: 6122247-6122386 Caenorhabditis elegans
Exon182813   173   V: 6122431-6122603 Caenorhabditis elegans
Exon182826   109   V: 6122651-6122759 Caenorhabditis elegans
Exon182839   163   V: 6122810-6122972 Caenorhabditis elegans
Exon182852   62   V: 6123038-6123099 Caenorhabditis elegans
Exon182865   118   V: 6123145-6123262 Caenorhabditis elegans
Exon182878   107   V: 6123307-6123413 Caenorhabditis elegans
Exon182891   111   V: 6123465-6123575 Caenorhabditis elegans
Exon182904   84   V: 6123642-6123725 Caenorhabditis elegans
Exon182917   5414   V: 6123771-6129184 Caenorhabditis elegans
Exon182930   172   V: 6129229-6129400 Caenorhabditis elegans
Exon182950   1083   V: 6129584-6130666 Caenorhabditis elegans
Exon182963   135   V: 6130915-6131049 Caenorhabditis elegans
Exon182980   123   V: 6133050-6133172 Caenorhabditis elegans
Exon182993   71   V: 6134453-6134523 Caenorhabditis elegans
Exon183091   159   V: 6144022-6144180 Caenorhabditis elegans
Exon183104   216   V: 6144360-6144575 Caenorhabditis elegans
Exon183117   4345   V: 6144977-6149321 Caenorhabditis elegans
Exon183130   234   V: 6149443-6149676 Caenorhabditis elegans
Exon183143   3798   V: 6149891-6153688 Caenorhabditis elegans
Exon183156   114   V: 6153899-6154012 Caenorhabditis elegans
Exon183169   680   V: 6154121-6154800 Caenorhabditis elegans
Exon183173   151   V: 6154949-6155099 Caenorhabditis elegans
Exon183177   849   V: 6155145-6155993 Caenorhabditis elegans
Exon183181   4500   V: 6156155-6160654 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:W06H8.8n.1 6121593 6160654 -1

1 Sequence

Length
23448

1 Sequence Ontology Term

Identifier Name Description
transcript