WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W06H8.8n.1 Sequence Name  W06H8.8n.1
Length (nt)  23448   Chromosome Location  V: 6121593-6160654
Chromosome . Primary Identifier  V Chromosome Location . Start  6121593
Chromosome Location . End  6160654 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W06H8.8n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006436 ttn-1 W06H8.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W06H8.8n W06H8.8n 23448   V: 6121593-6121636

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:W06H8.8n.1 6121593 6160654 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon182795   44   V: 6121593-6121636 Caenorhabditis elegans
Exon182816   147   V: 6121812-6121958 Caenorhabditis elegans
Exon182829   80   V: 6122005-6122084 Caenorhabditis elegans
Exon182842   66   V: 6122133-6122198 Caenorhabditis elegans
Exon182855   140   V: 6122247-6122386 Caenorhabditis elegans
Exon182868   173   V: 6122431-6122603 Caenorhabditis elegans
Exon182881   109   V: 6122651-6122759 Caenorhabditis elegans
Exon182894   163   V: 6122810-6122972 Caenorhabditis elegans
Exon182907   62   V: 6123038-6123099 Caenorhabditis elegans
Exon182920   118   V: 6123145-6123262 Caenorhabditis elegans
Exon182933   107   V: 6123307-6123413 Caenorhabditis elegans
Exon182946   111   V: 6123465-6123575 Caenorhabditis elegans
Exon182959   84   V: 6123642-6123725 Caenorhabditis elegans
Exon182972   5414   V: 6123771-6129184 Caenorhabditis elegans
Exon182985   172   V: 6129229-6129400 Caenorhabditis elegans
Exon183005   1083   V: 6129584-6130666 Caenorhabditis elegans
Exon183018   135   V: 6130915-6131049 Caenorhabditis elegans
Exon183035   123   V: 6133050-6133172 Caenorhabditis elegans
Exon183048   71   V: 6134453-6134523 Caenorhabditis elegans
Exon183146   159   V: 6144022-6144180 Caenorhabditis elegans
Exon183159   216   V: 6144360-6144575 Caenorhabditis elegans
Exon183172   4345   V: 6144977-6149321 Caenorhabditis elegans
Exon183185   234   V: 6149443-6149676 Caenorhabditis elegans
Exon183198   3798   V: 6149891-6153688 Caenorhabditis elegans
Exon183211   114   V: 6153899-6154012 Caenorhabditis elegans
Exon183224   680   V: 6154121-6154800 Caenorhabditis elegans
Exon183228   151   V: 6154949-6155099 Caenorhabditis elegans
Exon183232   849   V: 6155145-6155993 Caenorhabditis elegans
Exon183236   4500   V: 6156155-6160654 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:W06H8.8n.1 6121593 6160654 -1

1 Sequence

Length
23448

1 Sequence Ontology Term

Identifier Name Description
transcript