WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K04A8.6a.2 Sequence Name  K04A8.6a.2
Length (nt)  3451   Chromosome Location  V: 6533617-6546500
Chromosome . Primary Identifier  V Chromosome Location . Start  6533617
Chromosome Location . End  6546500 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K04A8.6a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001089 dre-1 K04A8.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K04A8.6a K04A8.6a 2811   V: 6533990-6534116

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K04A8.6a.2 6533617 6546500 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon184385   500   V: 6533617-6534116 Caenorhabditis elegans
Exon184388   99   V: 6534312-6534410 Caenorhabditis elegans
Exon184391   148   V: 6534463-6534610 Caenorhabditis elegans
Exon184394   306   V: 6534714-6535019 Caenorhabditis elegans
Exon184397   181   V: 6535160-6535340 Caenorhabditis elegans
Exon184400   532   V: 6535394-6535925 Caenorhabditis elegans
Exon184403   191   V: 6535979-6536169 Caenorhabditis elegans
Exon184406   853   V: 6536286-6537138 Caenorhabditis elegans
Exon184409   144   V: 6537466-6537609 Caenorhabditis elegans
Exon184412   358   V: 6537705-6538062 Caenorhabditis elegans
Exon184418   139   V: 6546362-6546500 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K04A8.6a.2 6533617 6546500 -1

1 Sequence

Length
3451

1 Sequence Ontology Term

Identifier Name Description
transcript