WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T10H9.5a.1 Sequence Name  T10H9.5a.1
Length (nt)  1870   Chromosome Location  V: 6662191-6665813
Chromosome . Primary Identifier  V Chromosome Location . Start  6662191
Chromosome Location . End  6665813 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T10H9.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004062 pmp-5 T10H9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T10H9.5a T10H9.5a 1797   V: 6662259-6662381

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T10H9.5a.1 6662191 6665813 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon184663   191   V: 6662191-6662381 Caenorhabditis elegans
Exon184665   145   V: 6662865-6663009 Caenorhabditis elegans
Exon184666   88   V: 6663111-6663198 Caenorhabditis elegans
Exon184668   246   V: 6663247-6663492 Caenorhabditis elegans
Exon184670   170   V: 6663621-6663790 Caenorhabditis elegans
Exon184672   92   V: 6664148-6664239 Caenorhabditis elegans
Exon184674   125   V: 6664290-6664414 Caenorhabditis elegans
Exon184676   146   V: 6664461-6664606 Caenorhabditis elegans
Exon184678   126   V: 6664665-6664790 Caenorhabditis elegans
Exon184680   120   V: 6664845-6664964 Caenorhabditis elegans
Exon184682   143   V: 6665025-6665167 Caenorhabditis elegans
Exon184684   128   V: 6665212-6665339 Caenorhabditis elegans
Exon184689   150   V: 6665664-6665813 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T10H9.5a.1 6662191 6665813 -1

1 Sequence

Length
1870

1 Sequence Ontology Term

Identifier Name Description
transcript