WormMine: Gene WBGene00005252

• WormBase Gene ID: WBGene00005252
• Gene Name: srh-29
• Sequence Name: ZC404.6
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in ASHL based on single-cell RNA-seq studies. Is affected by etr-1 based on RNA-seq studies. Is affected by resveratrol based on microarray studies.
• Biotype: SO:0000336
• Genetic Position: V :0.155588 ±0.002411
• Length (nt): 1315

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005252

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

33 Allele

• gk963301
• gk963553
• gk963042
• gk963041
• gk964259
• gk964351
• gk963850
• gk964527
• gk962860
• gk964528
• gk963772
• WBVar02122030
• WBVar02122031
• WBVar01973911
• gk237994
• gk237993
• gk237992
• gk871055
• gk534354
• gk325486
• gk325485
• WBVar01808395
• gk325484
• gk938618
• gk488280
• WBVar01740959
• gk347510
• gk691421
• WBVar01740960
• WBVar01740961

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005252
• Start: 6775997
• End: 6777311
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_6775809..6775996
• Length (nt): 188
• Chromosome Location: V: 6775809-6775996
• Organism: Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01.	N.A.	WBPaper00026929:Resveratrol_regulated_daf-16
	Transcripts that showed lower expression in neurons isolated from male day 2 vs day 8.	DESeq2 analysis was then employed for read normalization and differential expression analysis of the counted reads. PCA analysiswas performed along with the DESeq2 package. Genes with a log2(fold-change) > 1 and p-adjusted < 0.05 were considered differentially expressed in subsequent analysis.	WBPaper00066831:male-neuron_aging_upregulated
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA
	Single-cell RNA-Seq cell group 47_1 expressed in neuron.	scVI 0.6.0	WBPaper00065841:47_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005252
• Start: 6775997
• End: 6777311
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1315

1 Sequence Ontology Term