WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T07H8.4a Sequence Name  T07H8.4a
Length (nt)  6024   Chromosome Location  V: 6956638-6956778
Chromosome . Primary Identifier  V Chromosome Location . Start  6956638
Chromosome Location . End  6956778
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T07H8.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE48078 MEC-1, isoform a 228.4 2007 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00052813
WBRNAi00018412
WBRNAi00103515
WBRNAi00089153

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T07H8.4a 6956638 6956778 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003165 mec-1 T07H8.4 Caenorhabditis elegans

30 Locations


Feature . Primary Identifier
Start End Strand
CDS:T07H8.4a 6956638 6956778 1
CDS:T07H8.4a 6957029 6957117 1
CDS:T07H8.4a 6957173 6957422 1
CDS:T07H8.4a 6957478 6957601 1
CDS:T07H8.4a 6957769 6957964 1
CDS:T07H8.4a 6958249 6958339 1
CDS:T07H8.4a 6958388 6958508 1
CDS:T07H8.4a 6958557 6958769 1
CDS:T07H8.4a 6958814 6959517 1
CDS:T07H8.4a 6959572 6959695 1
CDS:T07H8.4a 6959741 6959872 1
CDS:T07H8.4a 6959917 6960059 1
CDS:T07H8.4a 6960105 6960503 1
CDS:T07H8.4a 6960550 6961284 1
CDS:T07H8.4a 6961365 6961419 1
CDS:T07H8.4a 6961473 6961579 1
CDS:T07H8.4a 6961658 6961787 1
CDS:T07H8.4a 6961832 6961901 1
CDS:T07H8.4a 6961970 6962106 1
CDS:T07H8.4a 6962156 6962356 1
CDS:T07H8.4a 6962406 6962609 1
CDS:T07H8.4a 6962683 6962762 1
CDS:T07H8.4a 6962818 6963008 1
CDS:T07H8.4a 6963056 6963297 1
CDS:T07H8.4a 6964646 6964783 1
CDS:T07H8.4a 6965152 6965346 1
CDS:T07H8.4a 6965392 6965722 1
CDS:T07H8.4a 6965775 6965842 1
CDS:T07H8.4a 6965890 6966013 1
CDS:T07H8.4a 6966064 6966352 1

1 Sequence

Length
6024

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T07H8.4a.1 T07H8.4a.1 6150   V: 6956537-6966425